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gene expression microarray data  (Illumina Inc)


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    Structured Review

    Illumina Inc gene expression microarray data
    Gene Expression Microarray Data, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+gene-expression+data/gene+expression+data/pm39616392-101-1-13
    Average 90 stars, based on 1 article reviews
    gene expression microarray data - by Bioz Stars, 2026-10
    90/100 stars

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    other:

    Article Title: Super Partition: fast, flexible, and interpretable large-scale data reduction in R
    Article Snippet: The computational efficiency of Super Partition was assessed and compared to Partition in several datasets, including transcriptome-wide microarray data in whole blood from the ABRIDGE and CAMP asthma cohorts ( n = 865, number of features (f) = 19,428) ( ; ), transcriptome-wide RNA-seq data in colon adenocarcinoma tumor tissue from The Cancer Genome Atlas (TCGA) ( n = 481, f = 60,660) , and Illumina 450K DNA methylation (DNAm) array data from the ABRIDGE cohort.

    Article Title: Progesterone receptor-dependent downregulation of MHC class I promotes tumor immune evasion and growth in breast cancer.
    Article Snippet: Gene expression values were taken from the Illumina HT- 12 v3 microarray data for genes involved in APP, P ro tected b y co p yrig h t, in clu d in g fo r u ses related to text an d d ata m in in g , A I train in g , an d sim ilar tech n o lo g ies. . at N ep al:B M J-P G S p o n so red o n M arch 21, 2025 h ttp ://jitc.b m j.co m / D o w n lo ad ed fro m 18 M arch 2025.

    Article Title: Alzheimer’s disease-specific transcriptomic and epigenomic changes in the tryptophan catabolic pathway
    Article Snippet: The gene expression microarray data used in the present study was generated using Illumina HumanHT-12 v4 BeadChip arrays as described in more detail previously [ ].

    Article Title: Progesterone receptor-dependent downregulation of MHC class I promotes tumor immune evasion and growth in breast cancer
    Article Snippet: Gene expression values were taken from the Illumina HT-12 v3 microarray data for genes involved in APP, including: HLA-A, HLA-B, HLA-C, B2M, NLRC5, TAP1, TAP2, TAPBP, PSMB8 , and PSMB9 .

    Microarray:

    Article Title: Multi-bioinformatics revealed potential biomarkers and repurposed drugs for gastric adenocarcinoma-related gastric intestinal metaplasia.
    Article Snippet: .. Illumina microarray gene expression data were extracted as an Excel document, while the control data results were extracted. ..

    Article Title: Prognostic and molecular multi-platform analysis of CALGB 40603 (Alliance) and public triple-negative breast cancer datasets.
    Article Snippet: .. For METABRIC, normalized Illumina HT 12 microarray RNA expression data was downloaded from the European Genomephenome Archive at the European Bioinformatics Institute (EGAS00000000083) and were subsequently log2 transformed with a pseudocount of one20. ..

    Article Title: Alzheimer's disease-specific transcriptomic and epigenomic changes in the tryptophan catabolic pathway.
    Article Snippet: .. The gene expression microarray data used in the present study was generated using Illumina HumanHT-12 v4 BeadChip arrays as described in more detail previously [30]. .. For differential DNA methylation analysis in the BSHRIBBDP samples, bisulfite (BS) and oxidative BS (oxBS) conversion of genomic DNA (gDNA) derived from MTG tissue was performed using the TrueMethyl 24 Kit version 2.0 (Cambridge Epigenetix, Cambridge, UK).

    Article Title: Prognostic and molecular multi-platform analysis of CALGB 40603 (Alliance) and public triple-negative breast cancer datasets
    Article Snippet: .. For METABRIC, normalized Illumina HT 12 microarray RNA expression data was downloaded from the European Genome-phenome Archive at the European Bioinformatics Institute (EGAS00000000083) and were subsequently log2 transformed with a pseudocount of one . ..

    Gene Expression:

    Article Title: Multi-bioinformatics revealed potential biomarkers and repurposed drugs for gastric adenocarcinoma-related gastric intestinal metaplasia.
    Article Snippet: .. Illumina microarray gene expression data were extracted as an Excel document, while the control data results were extracted. ..

    Article Title: Alzheimer's disease-specific transcriptomic and epigenomic changes in the tryptophan catabolic pathway.
    Article Snippet: .. The gene expression microarray data used in the present study was generated using Illumina HumanHT-12 v4 BeadChip arrays as described in more detail previously [30]. .. For differential DNA methylation analysis in the BSHRIBBDP samples, bisulfite (BS) and oxidative BS (oxBS) conversion of genomic DNA (gDNA) derived from MTG tissue was performed using the TrueMethyl 24 Kit version 2.0 (Cambridge Epigenetix, Cambridge, UK).

    Control:

    Article Title: Multi-bioinformatics revealed potential biomarkers and repurposed drugs for gastric adenocarcinoma-related gastric intestinal metaplasia.
    Article Snippet: .. Illumina microarray gene expression data were extracted as an Excel document, while the control data results were extracted. ..

    RNA Expression:

    Article Title: Prognostic and molecular multi-platform analysis of CALGB 40603 (Alliance) and public triple-negative breast cancer datasets.
    Article Snippet: .. For METABRIC, normalized Illumina HT 12 microarray RNA expression data was downloaded from the European Genomephenome Archive at the European Bioinformatics Institute (EGAS00000000083) and were subsequently log2 transformed with a pseudocount of one20. ..

    Article Title: Prognostic and molecular multi-platform analysis of CALGB 40603 (Alliance) and public triple-negative breast cancer datasets
    Article Snippet: .. For METABRIC, normalized Illumina HT 12 microarray RNA expression data was downloaded from the European Genome-phenome Archive at the European Bioinformatics Institute (EGAS00000000083) and were subsequently log2 transformed with a pseudocount of one . ..

    Transformation Assay:

    Article Title: Prognostic and molecular multi-platform analysis of CALGB 40603 (Alliance) and public triple-negative breast cancer datasets.
    Article Snippet: .. For METABRIC, normalized Illumina HT 12 microarray RNA expression data was downloaded from the European Genomephenome Archive at the European Bioinformatics Institute (EGAS00000000083) and were subsequently log2 transformed with a pseudocount of one20. ..

    Article Title: Prognostic and molecular multi-platform analysis of CALGB 40603 (Alliance) and public triple-negative breast cancer datasets
    Article Snippet: .. For METABRIC, normalized Illumina HT 12 microarray RNA expression data was downloaded from the European Genome-phenome Archive at the European Bioinformatics Institute (EGAS00000000083) and were subsequently log2 transformed with a pseudocount of one . ..

    Generated:

    Article Title: Alzheimer's disease-specific transcriptomic and epigenomic changes in the tryptophan catabolic pathway.
    Article Snippet: .. The gene expression microarray data used in the present study was generated using Illumina HumanHT-12 v4 BeadChip arrays as described in more detail previously [30]. .. For differential DNA methylation analysis in the BSHRIBBDP samples, bisulfite (BS) and oxidative BS (oxBS) conversion of genomic DNA (gDNA) derived from MTG tissue was performed using the TrueMethyl 24 Kit version 2.0 (Cambridge Epigenetix, Cambridge, UK).



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